Description

renjin-benchmarks Here is a collection of bioinformatic workflows use in different fields of biology for the purpose of benchmarking. Each folder is a separate workflow benchmark and contains all the necessary information for running of that workflow in a reproducible way. To achieve this each folder contains two files in Debian Control Format named BENCHMARK, and packrat.lock. Packrat is used for control of package versions. BENCHMARK contains the following fields Name: Name of the workflow Description: A short description. License: license information File: name of the file used by the workflow Location: location were this file can be downloaded Hash: md5sum hash of the file packrat.lock contains the following information for each package used in the workflow: Package: package name Source: repository source github/CRAN/Bioconductor Version: version Hash: md5sum of source zipfile Requires: required packages GithubRepo: github repo name GithubUsername: github user GithubRef: which branch GithubSha1: Sha1 of the commit