The CGAT code collection has grown out of the work in comparative genomics by the Ponting group in the last decade. Now, CGAT has added functionality to do next-generation sequencing analysis. The CGAT Code collection has two components. The first component is a collection of scripts, the CGAT tools. The second component is a collection of pipelines. While both components are part of this collection, we are currently concentrating on publishing the CGAT tools.
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