Snakemake

Versions

latest
stable
v5.4.2
v5.4.1
v5.4.0
v5.3.1
v5.3.0
v5.2.4
v5.2.3
v5.2.2
v5.2.1
v5.2.0
v5.1.5
v5.1.4
v5.1.3
v5.1.2
v5.1.1
v5.0.0
v4.8.1
v4.8.0
v4.7.0
v4.6.0
v4.5.1
v4.5.0
v4.3.0
v4.2.0
v4.1.0
v4.0.0
v3.13.3
v3.13.2
v3.13.1
v3.13.0
v3.12.0
v3.11.2
v3.11.1
v3.11.0
v3.10.2
v3.10.1
v3.10.0
v3.9.1
v3.9.0
v3.7.1
master

Description

Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in python style, together with a fast and comfortable execution environment. On top, snakemake provides a generic cluster/batch system support.