CNVkit is a flexible toolkit for calling copy number from DNA sequencing data. For whole-exome and targeted gene panels, off-target sequencing reads from hybrid capture are used to improve copy number estimates. Targeted amplicon capture and whole-genome sequencing protocols are also supported. CNVKit implements a variety of visualization modes, analysis methods, and output file formats for easy integration into existing pipelines.
1 year, 10 months ago passed
.. image:: https://readthedocs.org/projects/cnvkit/badge/?version=stable :target: https://cnvkit.readthedocs.io/en/stable/?badge=stable :alt: Documentation Status
<a href='https://cnvkit.readthedocs.io/en/stable/?badge=stable'> <img src='https://readthedocs.org/projects/cnvkit/badge/?version=stable' alt='Documentation Status' /> </a>