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Description
STRling (pronounced like “sterling”) is a method to detect large STR expansions from short-read sequencing data. It is capable of detecting novel STR expansions, that is expansions where there is no STR in the reference genome at that position (or a different repeat unit from what is in the reference). It can also detect STR expansions that are annotated in the reference genome. STRling uses kmer counting to recover mis-mapped STR reads. It then uses soft-clipped reads to precisely discover the position of the STR expansion in the reference genome.
Repository
https://github.com/quinlan-lab/STRling
Project Slug
strling
Last Built
8 months, 1 week ago passed
Maintainers
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Tags
nim-lang, short-tandem-repeats, str, whole-genome-sequencing
Short URLs
strling.readthedocs.io
strling.rtfd.io
Default Version
latest
'latest' Version
master