Welcome to Spatial Metabolomics documentation!¶

Spatial Metabolomics provides computational biology tools that aim to reveal the spatial organisation of metabolomic processes. For more information about the project, check: http://www.embl.de/research/units/scb/alexandrov/

Contents:

Project Tutorial¶

Description of how to use the project

Spatial Metabolomics API¶

Contents:

Engine¶

computing.py¶

computing_deprecated.py¶

imageentropy.py¶

imaging.py¶

imzml_to_txt.py¶

isocalc.py¶

metrics_db.py¶

python_to_txt.py¶

util.py¶

Webserver¶

Html source files are in the html directory.

webserver.py¶

handlers.py¶

globalvars.py¶

handlers_deprecated.py¶

Scripts¶

run_process_dataset¶

run_insert_to_db¶

run_aws_dataset¶

run_aws_dataset.sh

Synopsis:	A bash script to run dataset processing on AWS. Has a lot of hardcoded stuff, take a look inside.

run_aws_instance¶

run_aws_instance.sh

Synopsis:	A bash script to run dataset processing on AWS. Has a lot of hardcoded stuff, take a look inside.