Versions
Description
The SOP-GPU package, where SOP-GPU stands for the Self Orginized Polymer Model fully implemented on a Graphis Processing Unit (GPUs), is a scientific software package designed to perform Langevin Dynamics Simulations of the mechanical pulling/indentation of large biomolecular systems on the experimental subsecond (millisecond-to-second) timescale. The SOP-GPU package utilizes the Cα-atom based coarse-grained description of proteins combined with Langevin Dynamics in overdamped limit and computational power of modern GPUs.
Repository
https://github.com/BarsegovGroup/SOP-GPU
Project Slug
sop-gpu
Last Built
7 years, 7 months ago passed
Maintainers
Home Page
http://faculty.uml.edu/vbarsegov/
Badge
Tags
atomic-force-microscopy, biomechanics, biophysics, coarse-graining, gpu, graphic-processing-unit, langevin-dynamics, large-biomolecule, molecular-dynamic-simulations, nanoindentation, protein-model, self-organized-polymer-model
Short URLs
sop-gpu.readthedocs.io
sop-gpu.rtfd.io
Default Version
latest
'latest' Version
master
