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Description

The SOP-GPU package, where SOP-GPU stands for the Self Orginized Polymer Model fully implemented on a Graphis Processing Unit (GPUs), is a scientific software package designed to perform Langevin Dynamics Simulations of the mechanical pulling/indentation of large biomolecular systems on the experimental subsecond (millisecond-to-second) timescale. The SOP-GPU package utilizes the Cα-atom based coarse-grained description of proteins combined with Langevin Dynamics in overdamped limit and computational power of modern GPUs.

Repository

https://github.com/BarsegovGroup/SOP-GPU

Project Slug

sop-gpu

Last Built

3 years, 4 months ago passed

Maintainers

Home Page

http://faculty.uml.edu/vbarsegov/

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Tags

gpu, biomechanics, biophysics, coarse-graining, nanoindentation, protein-model, graphic-processing-unit, atomic-force-microscopy, large-biomolecule, molecular-dynamic-simulations, langevin-dynamics, self-organized-polymer-model

Project Privacy Level

Public

Short URLs

sop-gpu.readthedocs.io
sop-gpu.rtfd.io

Default Version

latest

'latest' Version

master