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Description
Pypgen provides various utilities for estimating standard genetic diversity measures including Gst, G'st, G''st, and Jost's D from large genomic datasets (Hedrick, 2005; Jost, 2008; Masatoshi Nei, 1973; Nei & Chesser, 1983). Pypgen operates both on individual SNPs as well as on user defined regions (e.g., five kilobase windows tiled across each chromosome). For the windowed analyses pypgen estimates the multi-locus versions of each estimator.
Repository
https://github.com/ngcrawford/pypgen.git
Project Slug
pypgen
Last Built
7 years, 6 months ago failed
Maintainers
Home Page
http://pypi.python.org/pypi/pypgen
Badge
Tags
fst, f-statistic, gst, selection-scans, sliding-window, snp, snv
Short URLs
pypgen.readthedocs.io
pypgen.rtfd.io
Default Version
latest
'latest' Version
master
