NIDM Results Viewer¶
This is a command line (to browser) as well as python module for rendering NIDM Results (turtle files) into an interactive viewer. The viewer currently supports parsing and interactive browsing of peak coordinates, viewing associated brain maps, and saving static images to file.
Contents:
Installation¶
To install
pip install git+git://github.com/vsoch/nidmviewer.git
Running Examples¶
Python (server)¶
#!/usr/bin/python
from nidmviewer.viewer import generate
from glob import glob
import os
# HTML FOR EMBEDDING #####################################################
ttl_files = glob("fsl/*.ttl")
html_snippet = generate(ttl_files=ttl_files)
# LOCAL BROWSER ##########################################################
httpd = generate(ttl_files=nidm_files,base_image=standard_brain,view_in_browser=True)
Command Line¶
When installing with setup.py, an executable, nidmviewer is installed in your bin to view nidm files on the fly:
nidmviewer fsl/nidm.ttl
You can see the basic usage by typing the command:
nidmviewer
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
nidmviewer: error: too few arguments
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
command line or server tool to view or compare nidm results.
positional arguments:
ttl List of comma separated ttl files to parse.
base base image (standard brain map) to use for the viewer
background.