FastQCFastQC Report
Wed 4 Mar 2015
trimmedLRindole4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenametrimmedLRindole4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17217032
Sequences flagged as poor quality0
Sequence length36-50
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACT832630.4836083245939254No Hit
GCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAGCCGA691980.40191596321595957No Hit
GTGGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCG617520.35866809099268676No Hit
CTTCAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTT573070.3328506330243215No Hit
CGCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCCG541580.31456060487080467No Hit
GCACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCC489690.2844218446013227No Hit
AGCAAGTCTACCGACGACTGGCAGATCCTTTAATACCCGTTTACCATGGG438100.2544573303923696No Hit
GCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCCGG422710.24551850748723703No Hit
GTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTA419480.24364245823554256No Hit
CCGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTA373100.21670401727777472No Hit
CCGCGTTCCACCAATATCGTTTCCAATATTGTATCGTCACTGTGGCACTT336830.19563766855983075No Hit
GTTCTATTCAGCAAGTCTACCGACGACTGGCAGATCCTTTAATACCCGTT312960.18177349034374798No Hit
GTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAGC285300.16570800356298343No Hit
CAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGAT271720.15782046522304194No Hit
CTTTAATTCATCATCTTGTCCATCTGTTCCATCATTATCAGATGGGATGA269960.15679822166793905No Hit
CAAAAACCAATTACGATAGCACATACATTAATCCATGCGAATGTCTTTTG262150.15226201589217003No Hit
CGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTAT261900.1521168108417293No Hit
GTTTTGTCGTAATATAATTATCAGGCATAATTATATCGAGGTAATCATCT237540.13796803072678265No Hit
CTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCATAAAAT226370.13148026907308993No Hit
CTTCAATCGGCGTATCGCCACTCCGCATCATGATAACATGACCGATTGTA224100.13016180721508794No Hit
GTCAAATGGTATTACATCATACCGCCCATGCCGCCTTGTGGAGCAGCAGG223220.1296506854375365No Hit
ATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTCCCCTG206130.11972446818940687No Hit
GCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTC205150.11915526439167912No Hit
GGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAG198120.11507209837328523No Hit
AAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATT197880.11493270152486212No Hit
GGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCA193120.11216799736447026No Hit
GCTGGAGCAAGCTTTTGTCCGTTTTCTAAAGTACGACCTTCTCCAACGGC186330.10822422819449949No Hit
CAATATTGTATCGTCACTGTGGCACTTTTCAGGAATACTAAGACATAGTT173950.10103367409667358No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTGT102950.037.227621
GTTCTAT45150.035.3932951
TCTATTC47600.031.680783
CGAAGCC114250.029.84104242
CGCAACG87450.029.443241
CCGTGTC138800.027.5964572
GACTCCG10150.027.4652653
AAGCCGA126050.027.09810844
GTCGGCT18800.026.6209981
GAAGCCG130150.026.29177943
GGAGTCC19750.025.98881535
TTCTATT62800.025.6556952
GGGTGTG12650.024.06993142
GAGTCCG21900.023.86034636
CCGAAGC144250.023.671941
AATCGGC48250.023.4747525
TACGTGA34600.023.38757339
GGTGTGG13350.023.37773943
GTGGGTT122050.023.2545591
CAATCGG51450.023.0385174