FastQCFastQC Report
Wed 4 Mar 2015
trimmedLRLB1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenametrimmedLRLB1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14191378
Sequences flagged as poor quality0
Sequence length36-50
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCG800380.5639903327217414No Hit
GCACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCC655660.46201292080303974No Hit
CTTCAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTT418410.2948339477674402No Hit
CCCGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACT415440.29274112774672056No Hit
GCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAGCCGA408640.28794948594843994No Hit
GTGCAATTCAGCAGTATGAGTACCACCACCATAAGGAGTCCGAATGGTAA352680.24851709256141302No Hit
GCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCCGG351950.24800269572130348No Hit
CGCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCCG334460.23567831115484345No Hit
GTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAGC304900.21484876239643536No Hit
GTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTA278200.19603452180612765No Hit
GTTTGTGGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTT249260.17564185803520982No Hit
AGCAAGTCTACCGACGACTGGCAGATCCTTTAATACCCGTTTACCATGGG244630.17237931369314521No Hit
GGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAG235330.16582603888079087No Hit
GCCAAGGTAAGTTACATGAGCACCTTCATCCTTAGCACCAACTTCAAAAG224680.15832148224083664No Hit
GTTTTGTCGTAATATAATTATCAGGCATAATTATATCGAGGTAATCATCT223390.15741247960557458No Hit
GTTCTATTCAGCAAGTCTACCGACGACTGGCAGATCCTTTAATACCCGTT221040.15575654457234525No Hit
GGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCA213160.15020387731198478No Hit
GTCGCTGTCAGCATCTTCAAGGTGATCTCCCCAAGTCTTTTCAAGTTCAG212750.1499149694976767No Hit
GTGGAATGCAGGAAGACAGTGTTCAAAGAGAACATTAGGGTTTTCAGTAG212730.1499008764335641No Hit
CAAAAACCAATTACGATAGCACATACATTAATCCATGCGAATGTCTTTTG211740.1492032697599909No Hit
CAAGACTTCTGCGCCGTTATCACGTAATGTTTGCGCAAAAAGGTCATGTT207780.14641284306569807No Hit
GTGACGTCCCCCTTCTTCCTTAGTCATAACGTAAACTTCACCCTTGAAGT202350.14258657615912987No Hit
CCGCGTTCCACCAATATCGTTTCCAATATTGTATCGTCACTGTGGCACTT200740.14145208449806637No Hit
GGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAA199980.14091654806178794No Hit
CTTTAATTCATCATCTTGTCCATCTGTTCCATCATTATCAGATGGGATGA196890.13873916965639277No Hit
GGCGTCCTTAGCGTCAACAATTACAAGTTGGCCATCCTTCATTTCAGCAA183990.1296491433037722No Hit
CCGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTA172110.12127786322089369No Hit
GCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTC166970.11765594574395806No Hit
GTTATTTTCACGATAACCAAAGTAGAATTGGATAGCAGCAATTGCAATGT166070.11702175785889152No Hit
GTGACTTTTCAAGCAAAACGTCTGTCAAGTCCTGGCCGGCCAAGTTTCCA155250.10939741017398029No Hit
CTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCATAAAAT145210.10232269198946008No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTCTAT28400.037.8691021
CCCGTGT51250.036.4454231
GGAGTCC49950.032.9042935
GAGTCCG51100.032.19178836
AGGAGTC52650.031.3198334
ATCCTAC11350.030.7473016
GACTCCG6650.029.7048023
TCTATTC35200.028.8074653
GTCCGAA57400.028.67361638
ACTCTAG12500.027.74364515
CAGTATG61050.027.32371912
CCGTGTC68350.027.1989522
GTATGAG61700.027.03605814
GGGTGTG11150.026.91932742
AAGCCGA75050.026.72009844
AGTCCGA63650.026.31803737
GAAGCCG77100.026.08979643
CTATTCA41650.025.9272144
CGAAGCC77750.025.79356842
CCTATGC10300.025.5711213