FastQCFastQC Report
Wed 4 Mar 2015
trimmedLRehec1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenametrimmedLRehec1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14337375
Sequences flagged as poor quality0
Sequence length36-50
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACT1863151.299505662647451No Hit
GCACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCC1425080.9939615864131335No Hit
CTTCAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTT1389120.9688802866633537No Hit
CCGCGTTCCACCAATATCGTTTCCAATATTGTATCGTCACTGTGGCACTT1067630.7446481660694514No Hit
CGCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCCG916990.6395801183968474No Hit
CCGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTA755090.5266584713031499No Hit
GTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTA725200.5058108614722011No Hit
GTGGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCG705450.4920356759867131No Hit
GTTTTGTCGTAATATAATTATCAGGCATAATTATATCGAGGTAATCATCT593950.4142669072964891No Hit
CGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTAT562620.39241492951115525No Hit
CAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGAT514610.35892902292086243No Hit
CTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCATAAAAT490890.34238485078335473No Hit
GCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAGCCGA455520.3177150629037742No Hit
CAATATTGTATCGTCACTGTGGCACTTTTCAGGAATACTAAGACATAGTT423090.2950958595977297No Hit
GCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCCGG422920.2949772883808926No Hit
CACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCG422100.29440535662909No Hit
GGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCA403340.2813206741122416No Hit
GTCGTAATATAATTATCAGGCATAATTATATCGAGGTAATCATCTATCTC375810.26211911176209035No Hit
CAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCAC371390.2590362601243254No Hit
GCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTC363320.25340761471329304No Hit
CACCAATATCGTTTCCAATATTGTATCGTCACTGTGGCACTTTTCAGGAA338900.23637520815351487No Hit
GTGACGTCCCCCTTCTTCCTTAGTCATAACGTAAACTTCACCCTTGAAGT329910.2301048832160699No Hit
ATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTCCCCTG314290.21921028082197755No Hit
AAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATT307510.21448138170341502No Hit
CGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATTTCACTAAC305850.21332356864488794No Hit
GGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCT293430.2046608950383177No Hit
TAATTATCAGGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCG283030.1974071264788708No Hit
CAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTTGAG271500.18936520806633014No Hit
ATCAGGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATA269140.18771916058553256No Hit
CTTTAATTCATCATCTTGTCCATCTGTTCCATCATTATCAGATGGGATGA268290.187126304501347No Hit
CTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCC262680.18321345434572228No Hit
CCGCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCC256660.17901463831419628No Hit
CGCGTTCCACCAATATCGTTTCCAATATTGTATCGTCACTGTGGCACTTT255330.1780869929118824No Hit
GTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAGC252740.17628052554948168No Hit
GGCACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTC247750.17280011159643938No Hit
CATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTCC247230.17243742316846702No Hit
TTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTTGAGGGGT243080.16954289052214927No Hit
GCCGCATCATGGACGAACCCGGAATGGATCTACGCGCGCTACTTGTTAGG242910.16942431930531215No Hit
AGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATTT236430.16490466351057986No Hit
GTTTGTGGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTT233080.16256811306114266No Hit
GAAATACTCTCCCCTGGAATCACTTCAATTTGCTATCCAAAGCTCCCCTA227410.15861341424075187No Hit
ATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTCCCCTGGAATC218740.15256628218205914No Hit
CAAAAACCAATTACGATAGCACATACATTAATCCATGCGAATGTCTTTTG217470.1516804854445113No Hit
CCAATATTGTATCGTCACTGTGGCACTTTTCAGGAATACTAAGACATAGT206690.1441616753415461No Hit
CAGGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACT200050.13953042310743774No Hit
GGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAG193730.13512236375208153No Hit
TGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTTGAGGGGTT181450.12655733702996538No Hit
GTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATT179400.12512750765045902No Hit
TCGTAATATAATTATCAGGCATAATTATATCGAGGTAATCATCTATCTCA174970.12203768123523308No Hit
GCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTTGAGGGGTTT170630.11901062781715623No Hit
AATCACTTCAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTAC168930.11782491564878508No Hit
GTAAAATTCACGTTTACGATATTCTTGCAATGTTCCGTTACGTGAAACTG167410.11676474947471208No Hit
ATCGTTTCCAATATTGTATCGTCACTGTGGCACTTTTCAGGAATACTAAG165490.11542559220219879No Hit
CTGGAATCACTTCAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGT164960.11505592899676545No Hit
GGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAA159960.11156854026626213No Hit
GCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATTTCACTAACC158550.1105850966442602No Hit
TTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTC156470.10913434293237081No Hit
ATAATTATCAGGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATC156370.10906459515776074No Hit
TTCCAATATTGTATCGTCACTGTGGCACTTTTCAGGAATACTAAGACATA150400.10490065301353979No Hit
GCAAGTATCTGTAGGCCATGTTTTGTCGTAATATAATTATCAGGCATAAT149320.10414737704775108No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTGT210800.040.3859141
CGGGTCC3200.032.9294172
CGCAACG139300.030.5576131
AAGCCGA75000.029.62381244
GACTCCG4400.029.43693
CCGTGTC294600.028.9799692
CCTATCT14000.026.9707583
CTATCTA15350.025.5998484
GAAGCCG87650.025.4665843
TCCTATG3300.025.2791462
CGAAGCC88900.025.24045642
TACGTGA31450.024.94865439
GCGACTC5750.024.052791
TCCTATC17300.023.9832732
CCTATGC3400.023.8899673
CCGGGTC4650.023.6053161
ACTCTAG3650.023.45697815
CGTGTCC365500.023.4425013
TGACGTC62450.023.341482
GGAGTCC5550.023.0216235