FastQCFastQC Report
Wed 4 Mar 2015
trimmedLRehec3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenametrimmedLRehec3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17740184
Sequences flagged as poor quality0
Sequence length36-50
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTT1611230.908237479385783No Hit
CCCGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACT1559080.8788409409958768No Hit
GCACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCC1505060.8483902985448177No Hit
CCGCGTTCCACCAATATCGTTTCCAATATTGTATCGTCACTGTGGCACTT1128670.6362222624071994No Hit
CGCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCCG925250.5215560334661693No Hit
GCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAGCCGA866140.48823619867753343No Hit
GTGGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCG797540.44956692670154946No Hit
GTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTA748960.4221827687920261No Hit
CTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCATAAAAT711420.4010217706873841No Hit
CCGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTA614720.34651275319354075No Hit
GTTTTGTCGTAATATAATTATCAGGCATAATTATATCGAGGTAATCATCT601210.3388972741207194No Hit
GGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCA577020.32526156436708886No Hit
GCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCCGG568280.3203348961882244No Hit
CAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGAT529740.29861020607227073No Hit
CAATATTGTATCGTCACTGTGGCACTTTTCAGGAATACTAAGACATAGTT511050.28807480238085464No Hit
CGTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTAT478080.26948987676790725No Hit
GCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTC474740.2676071454501261No Hit
ATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTCCCCTG455150.25656441894852955No Hit
CAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCCGTCAC439110.24752279908708952No Hit
GTGACGTCCCCCTTCTTCCTTAGTCATAACGTAAACTTCACCCTTGAAGT397650.2241521282981056No Hit
CACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCG394040.22211720013727027No Hit
GGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCT376320.21212857769682658No Hit
GTCGTAATATAATTATCAGGCATAATTATATCGAGGTAATCATCTATCTC375730.21179599941015267No Hit
CACCAATATCGTTTCCAATATTGTATCGTCACTGTGGCACTTTTCAGGAA372400.20991890501248467No Hit
AAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATT369930.2085265857445447No Hit
GTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAGC359940.20289530255154062No Hit
CGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATTTCACTAAC346580.19536437728041603No Hit
ATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTCCCCTGGAATC334770.18870717462682463No Hit
GCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTTGAGGGGTTT328170.18498680735216727No Hit
CAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTTGAG318800.17970501320617643No Hit
CATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACTCTCC315010.17756862048330502No Hit
GCCGCATCATGGACGAACCCGGAATGGATCTACGCGCGCTACTTGTTAGG298410.16821133309553046No Hit
CTTTAATTCATCATCTTGTCCATCTGTTCCATCATTATCAGATGGGATGA295390.1665089832213691No Hit
AGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATTT292500.16487991330867818No Hit
ATCAGGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATA292170.16469389494494532No Hit
TTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTTGAGGGGT282640.15932191007714464No Hit
TAATTATCAGGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCG280070.15787322160807352No Hit
CAAAAACCAATTACGATAGCACATACATTAATCCATGCGAATGTCTTTTG277470.15640762237866304No Hit
GAAATACTCTCCCCTGGAATCACTTCAATTTGCTATCCAAAGCTCCCCTA262740.1481044390520414No Hit
GGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAAG257950.14540435431785825No Hit
CTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTCCGCC246300.13883734238607673No Hit
GTCACTGTGGCACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTC246090.13871896706370127No Hit
CGCGTTCCACCAATATCGTTTCCAATATTGTATCGTCACTGTGGCACTTT237560.13391067420721228No Hit
GGCACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGTCCGTTTTTC236950.13356682208031215No Hit
GCCATTTCAATCTCTACGTTCATATCTCAACTATTTAGATTTCACTAACC235820.1329298501075299No Hit
CAGGCATAATTATATCGAGGTAATCATCTATCTCAGAGTATCGAAATACT227550.12826811717398195No Hit
CCAATATTGTATCGTCACTGTGGCACTTTTCAGGAATACTAAGACATAGT226670.12777206820402764No Hit
CCGCAACGTTAGGTATGGAAGTGGAATTGTTACTTCAACCTTATACGTCC224620.12661649958083862No Hit
TGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTACCGCTTGAGGGGTT223980.12625573669359913No Hit
GTAAAATTCACGTTTACGATATTCTTGCAATGTTCCGTTACGTGAAACTG222930.1256638600817218No Hit
GTTTGTGGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTT206920.11663915098062116No Hit
GGGTTGCGGCCCTTACGTGCAGCACGTTGACGTACTTCGAAGTTACCGAA202870.1143561983348087No Hit
CGTCACTGTGGCACTTTTCAGGAATACTAAGACATAGTTAAAACCTTAGT202380.11407998924926598No Hit
GTTTTCGCGAGCAGCTTCAGCCAAAGCTTGAACACGTCCATGGTAAAGGT198580.11193795960628143No Hit
GTTAAAACCTTAGTCCGTTTTTCCGCCGTCACCATAAAATGGTGCCCCGC191380.10787937712483703No Hit
GTAATCATCTATCTCAGAGTATCGAAATACTCTCCCCTGGAATCACTTCA188470.10623903337191992No Hit
AAATACTCTCCCCTGGAATCACTTCAATTTGCTATCCAAAGCTCCCCTAC186990.10540476919517858No Hit
GTGTCCAAGCATATCGCCATTTCAATCTCTACGTTCATATCTCAACTATT182510.10287942898450209No Hit
AATCACTTCAATTTGCTATCCAAAGCTCCCCTACCGTAGTTTGGGTTTAC181860.10251302917714945No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTGT177250.039.8183061
TCCTATG2950.032.743022
CCTATGC2900.032.550383
AAGCCGA129500.032.00238444
CGCAACG141100.030.4008431
GAAGCCG141150.029.592743
CGAAGCC141400.029.50923542
CCGTGTC246400.028.768382
TGACGTC71350.027.0755162
TACGTGA41950.026.3474839
CGGGTCC2200.025.9441072
GTGGGTT147200.025.0845451
ACGTCCC78900.024.623624
CCCTAGG1202.3646862E-1123.78283322
ACTCGGT26750.023.73214344
GACTCCG5500.023.5491353
GTCGCGC2800.023.5207561
CGTGTCC306250.023.282283
ATCTAGG3800.023.108111
CGTCCCT10050.022.9356632