datanator_frontend¶
datanator_frontend is a web interface for datanator, a toolkit for discovering and aggregating data for building and calibrating dynamical models of cellular biochemistry.
datanator is particularly useful for building large models, such as whole-cell models, that require large amounts of data to constrain large numbers of parameters. datanator was motivated by the need for large amounts of data to constrain whole-cell models and the fact that this data is hard to utilize because it is scattered across numerous siloed repositories.
Please see the datanator documentation for more information.
Contents¶
Installation¶
Install datanator_frontend¶
Second, please run the following shell commands to clone and install datanator from GitHub:
git clone git@github.com:KarrLab/datanator_frontend.git
npm install
Because datanator_frontend is under active development, we recommend regularly pulling the latest revision of datanator_frontend from GitHub.
Run datanator_frontend¶
To run a test server of the frontend, run the command:
npm run dev
NOTE: A backend server is needed to run successfully run the frontend. One can use the production Heroku server API or one can use a local server API (instructions on doing this shown below). To toggle between the two servers, toggle between API_ENDPOINT(Production) and TEST_API_ENDPOINT(Local) in the lib/fetch.js file.
Running Backend¶
Please see the installation instructions in the datanator documentation.
About¶
License¶
The software is released under the MIT license:
The MIT License (MIT)
Copyright (c) 2017-2018 Karr Lab
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
Development team¶
This package was developed by the following researchers in the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York, USA:
Acknowledgements¶
This work was supported the National Institutes of Health [grant numbers P41-EB023912, R35-GM119771] and the National Science Foundation [grant numbers 1649014, 1548123].