Description

This repository provides scripts to convert between fasta, VCF and counts files. Counts files are used by PoMo, an implementation of a polymorphism-aware phylogenetic model. For a reference, please see and cite Schrempf, D., Minh, B. Q., De Maio, N., von Haeseler, A., & Kosiol, C. (2016). Reversible Polmorphism-Aware Phylotenetic Models and their Application to Tree Inference. Journal of Theoretical Biology, in press.