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- Completed Feb. 9, 2022. 5:32 a.m.
- Build took 422 seconds
Error
{# I'd like to use ``build.error|urlize`` here, so we can have nice links. However, this is not possible because we are using `data-bind="text: error"` which means that Knockout.js will use the `.error` attribute to fill the content of this tag dynamically. #} Command /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/bin/python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir . failed: Processing /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/checkouts/latest Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting numpy Downloading numpy-1.22.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB) Collecting hera-tda>=0.0.1 Downloading hera-tda-0.0.1.tar.gz (413 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting bats-tda Downloading bats-tda-0.1.0.tar.gz (279 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting persim>=0.3.1 Downloading persim-0.3.1-py3-none-any.whl (47 kB) Collecting scipy Downloading scipy-1.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (42.1 MB) Collecting scikit-learn Downloading scikit_learn-1.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (26.4 MB) Collecting deprecated Downloading Deprecated-1.2.13-py2.py3-none-any.whl (9.6 kB) Collecting joblib Downloading joblib-1.1.0-py2.py3-none-any.whl (306 kB) Collecting matplotlib Downloading matplotlib-3.5.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (11.2 MB) Collecting hopcroftkarp Downloading hopcroftkarp-1.2.5.tar.gz (16 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting wrapt<2,>=1.10 Downloading wrapt-1.13.3-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (81 kB) Collecting kiwisolver>=1.0.1 Downloading kiwisolver-1.3.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB) Collecting fonttools>=4.22.0 Downloading fonttools-4.29.1-py3-none-any.whl (895 kB) Requirement already satisfied: pyparsing>=2.2.1 in /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/lib/python3.9/site-packages (from matplotlib->persim>=0.3.1->torch-tda==0.0.1) (3.0.7) Requirement already satisfied: python-dateutil>=2.7 in /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/lib/python3.9/site-packages (from matplotlib->persim>=0.3.1->torch-tda==0.0.1) (2.8.2) Collecting pillow>=6.2.0 Downloading Pillow-9.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/lib/python3.9/site-packages (from matplotlib->persim>=0.3.1->torch-tda==0.0.1) (21.3) Collecting cycler>=0.10 Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB) Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/lib/python3.9/site-packages (from python-dateutil>=2.7->matplotlib->persim>=0.3.1->torch-tda==0.0.1) (1.16.0) Building wheels for collected packages: torch-tda, hera-tda, bats-tda, hopcroftkarp Building wheel for torch-tda (pyproject.toml): started Building wheel for torch-tda (pyproject.toml): finished with status 'done' Created wheel for torch-tda: filename=torch_tda-0.0.1-py3-none-any.whl size=17457 sha256=1971e3b4289aab29218394bf3b44f7dc45bc3b6a82d64d66dfe2cfde5505d290 Stored in directory: /tmp/pip-ephem-wheel-cache-kj8tiq_t/wheels/75/fc/77/9840dcc54c5cadb235f05530a66a4e98b4554ceb45bcb816a2 Building wheel for hera-tda (setup.py): started ERROR: Command errored out with exit status 1: command: /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-56bwc45r cwd: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/ Complete output (60 lines): default compiler: unix running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/hera_tda copying hera_tda/__init__.py -> build/lib.linux-x86_64-3.9/hera_tda copying hera_tda/_version.py -> build/lib.linux-x86_64-3.9/hera_tda running build_ext building 'hera_tda.bottleneck' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/hera_tda gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/BATS/include/ -I/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/ -I/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/hera/bottleneck/include/ -I/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/hera/wasserstein/include/ -I/home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/include -I/home/docs/.asdf/installs/python/3.9.7/include/python3.9 -c hera_tda/bottleneck.cpp -o build/temp.linux-x86_64-3.9/hera_tda/bottleneck.o -std=c++17 hera_tda/bottleneck.cpp: In function ‘void pybind11_init_bottleneck(pybind11::module_&)’: hera_tda/bottleneck.cpp:87:64: error: no matching function for call to ‘pybind11::module_::def(const char [19], <unresolved overloaded function type>)’ 87 | m.def("BottleneckDistance", &BottleneckDistanceBATS<double>); | ^ In file included from hera_tda/bottleneck.cpp:7: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: candidate: ‘template<class Func, class ... Extra> pybind11::module_& pybind11::module_::def(const char*, Func&&, const Extra& ...)’ 1032 | module_ &def(const char *name_, Func &&f, const Extra& ... extra) { | ^~~ /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: template argument deduction/substitution failed: hera_tda/bottleneck.cpp:87:64: note: couldn’t deduce template parameter ‘Func’ 87 | m.def("BottleneckDistance", &BottleneckDistanceBATS<double>); | ^ hera_tda/bottleneck.cpp:88:60: error: no matching function for call to ‘pybind11::module_::def(const char [19], <unresolved overloaded function type>)’ 88 | m.def("BottleneckDistance", &BottleneckDistance<double>); | ^ In file included from hera_tda/bottleneck.cpp:7: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: candidate: ‘template<class Func, class ... Extra> pybind11::module_& pybind11::module_::def(const char*, Func&&, const Extra& ...)’ 1032 | module_ &def(const char *name_, Func &&f, const Extra& ... extra) { | ^~~ /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: template argument deduction/substitution failed: hera_tda/bottleneck.cpp:88:60: note: couldn’t deduce template parameter ‘Func’ 88 | m.def("BottleneckDistance", &BottleneckDistance<double>); | ^ hera_tda/bottleneck.cpp:89:76: error: no matching function for call to ‘pybind11::module_::def(const char [25], <unresolved overloaded function type>)’ 89 | m.def("BottleneckDistanceApprox", &BottleneckDistanceApproxBATS<double>); | ^ In file included from hera_tda/bottleneck.cpp:7: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: candidate: ‘template<class Func, class ... Extra> pybind11::module_& pybind11::module_::def(const char*, Func&&, const Extra& ...)’ 1032 | module_ &def(const char *name_, Func &&f, const Extra& ... extra) { | ^~~ /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: template argument deduction/substitution failed: hera_tda/bottleneck.cpp:89:76: note: couldn’t deduce template parameter ‘Func’ 89 | m.def("BottleneckDistanceApprox", &BottleneckDistanceApproxBATS<double>); | ^ hera_tda/bottleneck.cpp:90:72: error: no matching function for call to ‘pybind11::module_::def(const char [25], <unresolved overloaded function type>)’ 90 | m.def("BottleneckDistanceApprox", &BottleneckDistanceApprox<double>); | ^ In file included from hera_tda/bottleneck.cpp:7: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: candidate: ‘template<class Func, class ... Extra> pybind11::module_& pybind11::module_::def(const char*, Func&&, const Extra& ...)’ 1032 | module_ &def(const char *name_, Func &&f, const Extra& ... extra) { | ^~~ /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: template argument deduction/substitution failed: hera_tda/bottleneck.cpp:90:72: note: couldn’t deduce template parameter ‘Func’ 90 | m.def("BottleneckDistanceApprox", &BottleneckDistanceApprox<double>); | ^ error: command '/usr/bin/gcc' failed with exit code 1 ---------------------------------------- ERROR: Failed building wheel for hera-tda Building wheel for hera-tda (setup.py): finished with status 'error' Running setup.py clean for hera-tda Building wheel for bats-tda (setup.py): started Building wheel for bats-tda (setup.py): still running... Building wheel for bats-tda (setup.py): still running... Building wheel for bats-tda (setup.py): still running... Building wheel for bats-tda (setup.py): finished with status 'done' Created wheel for bats-tda: filename=bats_tda-0.1.0-cp39-cp39-linux_x86_64.whl size=28709764 sha256=fe9f7546d508711b1cc085dc0c59319f3424075c800d8f5946c70bd774c62453 Stored in directory: /tmp/pip-ephem-wheel-cache-kj8tiq_t/wheels/14/6b/02/6f1b3e4971b0373cc480763c6a69036cce7e595775546242ed Building wheel for hopcroftkarp (setup.py): started Building wheel for hopcroftkarp (setup.py): finished with status 'done' Created wheel for hopcroftkarp: filename=hopcroftkarp-1.2.5-py2.py3-none-any.whl size=18119 sha256=30e1da13076f81d9aa3e76d3ca235164823b37d25ce39fedff8ea2b2535bc874 Stored in directory: /tmp/pip-ephem-wheel-cache-kj8tiq_t/wheels/57/16/69/97f76cd294aad962fc5e1a15ab19c07fd885016deda8f200c3 Successfully built torch-tda bats-tda hopcroftkarp Failed to build hera-tda Installing collected packages: numpy, wrapt, threadpoolctl, scipy, pillow, kiwisolver, joblib, fonttools, cycler, scikit-learn, matplotlib, hopcroftkarp, deprecated, persim, hera-tda, bats-tda, torch-tda Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Running setup.py install for hera-tda: started ERROR: Command errored out with exit status 1: command: /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-5un5_i2b/install-record.txt --single-version-externally-managed --compile --install-headers /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/include/site/python3.9/hera-tda cwd: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/ Complete output (60 lines): default compiler: unix running install running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/hera_tda copying hera_tda/__init__.py -> build/lib.linux-x86_64-3.9/hera_tda copying hera_tda/_version.py -> build/lib.linux-x86_64-3.9/hera_tda running build_ext building 'hera_tda.bottleneck' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/hera_tda gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/BATS/include/ -I/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/ -I/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/hera/bottleneck/include/ -I/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/hera/wasserstein/include/ -I/home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/include -I/home/docs/.asdf/installs/python/3.9.7/include/python3.9 -c hera_tda/bottleneck.cpp -o build/temp.linux-x86_64-3.9/hera_tda/bottleneck.o -std=c++17 hera_tda/bottleneck.cpp: In function ‘void pybind11_init_bottleneck(pybind11::module_&)’: hera_tda/bottleneck.cpp:87:64: error: no matching function for call to ‘pybind11::module_::def(const char [19], <unresolved overloaded function type>)’ 87 | m.def("BottleneckDistance", &BottleneckDistanceBATS<double>); | ^ In file included from hera_tda/bottleneck.cpp:7: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: candidate: ‘template<class Func, class ... Extra> pybind11::module_& pybind11::module_::def(const char*, Func&&, const Extra& ...)’ 1032 | module_ &def(const char *name_, Func &&f, const Extra& ... extra) { | ^~~ /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: template argument deduction/substitution failed: hera_tda/bottleneck.cpp:87:64: note: couldn’t deduce template parameter ‘Func’ 87 | m.def("BottleneckDistance", &BottleneckDistanceBATS<double>); | ^ hera_tda/bottleneck.cpp:88:60: error: no matching function for call to ‘pybind11::module_::def(const char [19], <unresolved overloaded function type>)’ 88 | m.def("BottleneckDistance", &BottleneckDistance<double>); | ^ In file included from hera_tda/bottleneck.cpp:7: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: candidate: ‘template<class Func, class ... Extra> pybind11::module_& pybind11::module_::def(const char*, Func&&, const Extra& ...)’ 1032 | module_ &def(const char *name_, Func &&f, const Extra& ... extra) { | ^~~ /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: template argument deduction/substitution failed: hera_tda/bottleneck.cpp:88:60: note: couldn’t deduce template parameter ‘Func’ 88 | m.def("BottleneckDistance", &BottleneckDistance<double>); | ^ hera_tda/bottleneck.cpp:89:76: error: no matching function for call to ‘pybind11::module_::def(const char [25], <unresolved overloaded function type>)’ 89 | m.def("BottleneckDistanceApprox", &BottleneckDistanceApproxBATS<double>); | ^ In file included from hera_tda/bottleneck.cpp:7: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: candidate: ‘template<class Func, class ... Extra> pybind11::module_& pybind11::module_::def(const char*, Func&&, const Extra& ...)’ 1032 | module_ &def(const char *name_, Func &&f, const Extra& ... extra) { | ^~~ /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: template argument deduction/substitution failed: hera_tda/bottleneck.cpp:89:76: note: couldn’t deduce template parameter ‘Func’ 89 | m.def("BottleneckDistanceApprox", &BottleneckDistanceApproxBATS<double>); | ^ hera_tda/bottleneck.cpp:90:72: error: no matching function for call to ‘pybind11::module_::def(const char [25], <unresolved overloaded function type>)’ 90 | m.def("BottleneckDistanceApprox", &BottleneckDistanceApprox<double>); | ^ In file included from hera_tda/bottleneck.cpp:7: /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: candidate: ‘template<class Func, class ... Extra> pybind11::module_& pybind11::module_::def(const char*, Func&&, const Extra& ...)’ 1032 | module_ &def(const char *name_, Func &&f, const Extra& ... extra) { | ^~~ /tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/pybind11/include/pybind11/pybind11.h:1032:14: note: template argument deduction/substitution failed: hera_tda/bottleneck.cpp:90:72: note: couldn’t deduce template parameter ‘Func’ 90 | m.def("BottleneckDistanceApprox", &BottleneckDistanceApprox<double>); | ^ error: command '/usr/bin/gcc' failed with exit code 1 ---------------------------------------- ERROR: Command errored out with exit status 1: /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4ss3si_7/hera-tda_3d2bfc9002a04ce2ade7518aac21ca23/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-5un5_i2b/install-record.txt --single-version-externally-managed --compile --install-headers /home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/include/site/python3.9/hera-tda Check the logs for full command output. Running setup.py install for hera-tda: finished with status 'error' WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/torch-tda/envs/latest/bin/python -m pip install --upgrade pip' command.