Contents

Overview

docs
tests
package

Procesing tools for Winrhizotron data.

• Free software: BSD license

Installation

pip install rhizopathy

Documentation

https://rhizopathy.readthedocs.io/

Development

To run the all tests run:

tox

Note, to combine the coverage data from all the tox environments run:

Windows	set PYTEST_ADDOPTS=--cov-append tox
Other	PYTEST_ADDOPTS=--cov-append tox

Installation

At the command line:

pip install rhizopathy

Usage

To use Rhizopathy in a project:

import rhizopathy

Reference

rhizopathy

Contributing

Contributions are welcome, and they are greatly appreciated! Every little bit helps, and credit will always be given.

Bug reports

When reporting a bug please include:

• Your operating system name and version.
• Any details about your local setup that might be helpful in troubleshooting.
• Detailed steps to reproduce the bug.

Documentation improvements

Rhizopathy could always use more documentation, whether as part of the official Rhizopathy docs, in docstrings, or even on the web in blog posts, articles, and such.

Feature requests and feedback

The best way to send feedback is to file an issue at https://github.com/williamgibb/rhizopathy/issues.

If you are proposing a feature:

• Explain in detail how it would work.
• Keep the scope as narrow as possible, to make it easier to implement.
• Remember that this is a volunteer-driven project, and that code contributions are welcome :)

Development

To set up rhizopathy for local development:

1. Fork rhizopathy (look for the “Fork” button).

2. Clone your fork locally:

   git clone git@github.com:your_name_here/rhizopathy.git
   

3. Create a branch for local development:

   git checkout -b name-of-your-bugfix-or-feature
   

   Now you can make your changes locally.

4. When you’re done making changes, run all the checks, doc builder and spell checker with tox one command:

   tox
   

5. Commit your changes and push your branch to GitHub:

   git add .
   git commit -m "Your detailed description of your changes."
   git push origin name-of-your-bugfix-or-feature
   

6. Submit a pull request through the GitHub website.

Pull Request Guidelines

If you need some code review or feedback while you’re developing the code just make the pull request.

For merging, you should:

1. Include passing tests (run tox) [1].
2. Update documentation when there’s new API, functionality etc.
3. Add a note to CHANGELOG.rst about the changes.
4. Add yourself to AUTHORS.rst.

[1]	If you don’t have all the necessary python versions available locally you can rely on Travis - it will run the tests for each change you add in the pull request. It will be slower though ...

Tips

To run a subset of tests:

tox -e envname -- py.test -k test_myfeature

To run all the test environments in parallel (you need to pip install detox):

detox

Seting up local test environment with pyenv & tox

Install the following python versions with pyenv: 1. 2.7.13 2. 3.3.6 3. 3.4.6 4. 3.5.3

Set those as local versions in a shell session: pyenv local 2.7.11 3.3.6 3.4.6 3.5.3 Then install detox in all of them: pip install detox

You should then be able to run the tests via tox.

Authors

• William Gibb - https://github.com/williamgibb/rhizopathy

Changelog

0.1.0 (2017-02-03)

• First release on PyPI.

Indices and tables

• Index
• Module Index
• Search Page