jbiot¶
This is the documentation of jbiot.
This jbiot python packages designed for bioinformatics develop toolkits
jbiot¶
Installation¶
use pip to install:
pip intall jbiot
or use git to clone latest code:
git clone git@123.57.226.13:/expan/DevRepos/jbiot.git
with jbiot install on your computer, the following script can be used:
- lsub
- csub
- smartFqs.py
- jbio.start/stop/send
- docker2sing.py
- startup
- md2html.py
- always
- filterTable.py
- render.py
Contents¶
Usage¶
lsub¶
use lsub to subject jbobs ,type lsub -h to check the detail usage:
lsub -h
Usage:
lsub <cmdfile> [--with-docker|--with-singularity][--dry][-e <email>][-w <wexin_name>][-n <job_nam>]
Options:
-h --help print this screen
--dry all done but run script
--with-docker prefer to use docker when run cmd
--with-singularity prefer to user singularity when run cmd
-e,--email=<email> email of you want to remind of
-w,--wechat=<name> wechat name you want to send to
-n,--name=<job_name> the name of this task.
csub¶
use csub to subject jobs to cluster, type csub -h to check detail usage
Note
documents will updated in time…