Set of programs to process, analyze and visualize Hi-C data
Sequencing techniques that probe the 3D organization of the genome generate large amounts of data whose processing, analysis and visualization is challenging. Here, we present HiCExplorer, a set of tools for the analysis and visualization of chromosome conformation data. HiCExplorer facilitates the creation of contact matrices, correction of contacts, TAD detection, A/B compartments, merging, reordering or chromosomes, conversion from different formats including cooler and detection of long-range contacts. Moreover, it allows the visualization of multiple contact matrices along with other types of data like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores), long range contacts and the visualization of viewpoints.
3 days, 7 hours ago passed
.. image:: http://readthedocs.org/projects/hicexplorer/badge/?version=latest :target: https://hicexplorer.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status
<a href='https://hicexplorer.readthedocs.io/en/latest/?badge=latest'> <img src='http://readthedocs.org/projects/hicexplorer/badge/?version=latest' alt='Documentation Status' /> </a>
Project Privacy Level