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Description

Set of programs to process, analyze and visualize Hi-C data

Sequencing techniques that probe the 3D organization of the genome generate large amounts of data whose processing, analysis and visualization is challenging. Here, we present HiCExplorer, a set of tools for the analysis and visualization of chromosome conformation data. HiCExplorer facilitates the creation of contact matrices, correction of contacts, TAD detection, A/B compartments, merging, reordering or chromosomes, conversion from different formats including cooler and detection of long-range contacts. Moreover, it allows the visualization of multiple contact matrices along with other types of data like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores), long range contacts and the visualization of viewpoints.

Repository

https://github.com/deeptools/HiCExplorer.git

Last Built

5 days, 4 hours ago passed

Maintainers

Home Page

https://github.com/deeptools/HiCExplorer.git

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Tags

Python, plotting, HiC, HTS

Project Privacy Level

Public

Short URLs

hicexplorer.readthedocs.io
hicexplorer.rtfd.io

Default Version

latest

'latest' Version

master