Main page

blah blah blah

Stuff

Content in the main body. Next comes the foo directive.

Options:

–opt1	I am the help for the –opt1 option
–opt2	I am the help for the –opt2 option

Commands:

BED-file

–sub-opt1	I am the help for the –sub-opt1 option
–sub-opt2	I am the help for the –sub-opt2 option

BAR

BAR content

BAR

I’m the content of the bar file.

Additional blah blah blah